CAPABILITIES

Technical Skills

Full-stack computational biology expertise

Programming Languages

Python R Bash/Shell Perl

Python Libraries

Scikit-learn Pandas NumPy Biopython Matplotlib Seaborn SciPy

R Packages

DESeq2 edgeR ggplot2 dplyr Bioconductor

NGS Data Analysis

RNA-Seq DNA-Seq ChIP-Seq Single-cell RNA-Seq Quality Control Read Alignment Variant Calling

Genomics

Genome Assembly Genome Annotation Comparative Genomics Phylogenetics Repeat Analysis Synteny Analysis

Transcriptomics

Differential Expression Gene Ontology Pathway Analysis Co-expression Networks Alternative Splicing

Statistics & Machine Learning

Statistical Modeling Hypothesis Testing Feature Selection Dimensionality Reduction Clustering (K-means, Hierarchical) Classification Random Forest XGBoost ROC-AUC Analysis Cross-validation

Data Processing

Data Preprocessing Data Normalization Batch Effect Correction Missing Data Imputation Outlier Detection

Bioinformatics Tools

BLAST BWA Bowtie2 STAR SAMtools BEDtools GATK AUGUSTUS RepeatMasker

Systems & Infrastructure

Linux/Unix HPC Clusters SLURM Docker Singularity Cloud Computing (AWS/GCP)

Workflow Management

Snakemake Nextflow Bash Scripting Pipeline Automation

Database Management

SQL NoSQL PostgreSQL MySQL MongoDB

Version Control & Collaboration

Git GitHub GitLab Code Review

Data Visualization

Matplotlib Seaborn ggplot2 Plotly Heatmaps PCA Plots Volcano Plots

Documentation & Communication

Scientific Writing R Markdown Jupyter Notebooks LaTeX Data Presentation

Research Skills

Experimental Design Reproducible Research Literature Review Project Management Collaboration Peer Review